Troubleshooting Culture Media Clumping and Vitrification
by Adriana Gallego, Ph.D.

by Adriana Gallego, Ph.D.
Researchers usually encounter two problems when working with gelling agents. They are clumping, and vitrification.
Clumping is fairly understood. Clumping occurs when clumps of gelling particles are formed.
Vitrification, or hyperhyricity, occurs when the culture media has excessive hydration.
When clumping occurs, the gelling agent's outer molecules become hydrated with the medium, and a surface layer forms, preventing the medium from penetrating and mixing efficiently with the agent.
Clumping also makes it challenging to get a uniform solid media.
To avoid clumping:
A result of vitrification can be that plants become bright, watery, and have a glassy appearance, affecting the normal in vitro plant development. Another consequence of vitrification is increased humidity inside your container, which may promote contamination.
The concentration of your gelling agent influences the vitrification process.
To avoid vitrification:

Gel strength: >1100 g/cm2
Applications: Tissue culture and general purpose
Catalog number: P1001
Instructions:
Gel strength: >900 g/cm2
Applications: Plant cell and tissue culture and microbiological work.
Catalog number: M1002
Instructions:
Gel strength: 950-1050 g/cm2
Applications: Plant tissue culture. This agar has few impurities.
Catalog number: P1003
Instructions:
Gel strength: 400 - 700 g/cm2
Applications: Plant tissue culture and microbiological work. Solidifies in the presence of soluble salts like Mg2+ and Ca2+.
Catalog number: G1101
Instructions:
Buckner, C. A., Lafrenie, R. M., Dénommée, J. A., Caswell, J. M., Want, D. A., Gan, G. G., Leong, Y. C., Bee, P. C., Chin, E., Teh, A. K. H., Picco, S., Villegas, L., Tonelli, F., Merlo, M., Rigau, J., Diaz, D., Masuelli, M., Korrapati, S., Kurra, P., … Mathijssen, R. H. J. (2016). Plant Tissue Culture: Current Status and Opportunities. Intech, 11(tourism), 13. https://www.intechopen.com/books/advanced-biometri...
Chandran, H., Meena, M., Barupal, T., & Sharma, K. (2020). Plant tissue culture as a perpetual source for production of industrially important bioactive compounds. Biotechnology Reports, 26, e00450. https://doi.org/10.1016/j.btre.2020.e00450
Chimdessa, E., & Agricultural, O. (2020). Composition and Preparation of Plant Tissue Culture Medium. Journal of Tissue Culture and Bioengineering, 3(01). https://doi.org/10.29011/2688-6502.000020
Datta, K., Potrykus, I., & Datta, S. K. (1992). Tissue Culture of Maize: Selection of Friable Callus Lines. Plant Cell Reports, 11, 229–233.
Espinosa-Leal, C. A., Puente-Garza, C. A., & García-Lara, S. (2018). In vitro plant tissue culture: means for production of biological active compounds. Planta, 248(1), 1–18. https://doi.org/10.1007/s00425-018-2910-1
Gulzar, B., Mujib, A., Qadir Malik, M., Mamgain, J., Syeed, R., & Zafar, N. (2020). Plant tissue culture: Agriculture and industrial applications. In Transgenic Technology Based Value Addition in Plant Biotechnology. INC. https://doi.org/10.1016/B978-0-12-818632-9.00002-2
Ikeuchi, M., Sugimoto, K., & Iwase, A. (2013). Plant callus: Mechanisms of induction and repression. Plant Cell, 25(9), 3159–3173. https://doi.org/10.1105/tpc.113.116053
Li, H. (2020). Nutrients translocation & plant growth in tissue culture.
Souza, J. M. M., Berkov, S., & Santos, A. S. (2014). Improvement of friable callus production of Boerhaavia paniculata rich and the investigation of its lipid profile by GC/MS. Anais Da Academia Brasileira de Ciencias, 86(3), 1015–1027. https://doi.org/10.1590/0001-3765201420130098
Suman, S. (2017). Plant tissue culture: A promising tool of quality material production with special reference to micropropagation of banana. Biochemical and Cellular Archives, 17(1), 1–26.
Yadav, V., Mallappa, C., Gangappa, S., Bathia, S., & Chattopadhyay, S. (2005). A Basic Helix-Loop-Helix Transcription Factor in Arabidopsis, MYC2, Acts as a Repressor of Blue Light-Mediated Photomorphogenic Growth. The Plant Cell, 17(7), 1953–1966. https://doi.org/10.1105/tpc.105.032060
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